Dr Benjamin Kaehler

  • PUBLICATIONS

Journal articles

Kaehler BD; Bokulich NA; McDonald D; Knight R; Caporaso JG; Huttley GA, 2019, 'Species abundance information improves sequence taxonomy classification accuracy', Nature Communications, vol. 10, pp. 4643, http://dx.doi.org/10.1038/s41467-019-12669-6

McDonald D; Kaehler B; Gonzalez A; DeReus J; Ackermann G; Marotz C; Huttley G; Knight R, 2019, 'Redbiom: A rapid sample discovery and feature characterization system', mSystems, vol. 4, http://dx.doi.org/10.1128/mSystems.00215-19

Bolyen E; Rideout JR; Dillon MR; Bokulich NA; Abnet CC; Al-Ghalith GA; Alexander H; Alm EJ; Arumugam M; Asnicar F; Bai Y; Bisanz JE; Bittinger K; Brejnrod A; Brislawn CJ; Brown CT; Callahan BJ; Caraballo-Rodríguez AM; Chase J; Cope EK; Da Silva R; Diener C; Dorrestein PC; Douglas GM; Durall DM; Duvallet C; Edwardson CF; Ernst M; Estaki M; Fouquier J; Gauglitz JM; Gibbons SM; Gibson DL; Gonzalez A; Gorlick K; Guo J; Hillmann B; Holmes S; Holste H; Huttenhower C; Huttley GA; Janssen S; Jarmusch AK; Jiang L; Kaehler BD; Kang KB; Keefe CR; Keim P; Kelley ST; Knights D; Koester I; Kosciolek T; Kreps J; Langille MGI; Lee J; Ley R; Liu YX; Loftfield E; Lozupone C; Maher M; Marotz C; Martin BD; McDonald D; McIver LJ; Melnik AV; Metcalf JL; Morgan SC; Morton JT; Naimey AT; Navas-Molina JA; Nothias LF; Orchanian SB; Pearson T; Peoples SL; Petras D; Preuss ML; Pruesse E; Rasmussen LB; Rivers A; Robeson MS; Rosenthal P; Segata N; Shaffer M; Shiffer A; Sinha R; Song SJ; Spear JR; Swafford AD; Thompson LR; Torres PJ; Trinh P; Tripathi A; Turnbaugh PJ; Ul-Hasan S; van der Hooft JJJ; Vargas F; Vázquez-Baeza Y; Vogtmann E; von Hippel M; Walters W, 2019, 'Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (Nature Biotechnology, (2019), 37, 8, (852-857), 10.1038/s41587-019-0209-9)', Nature Biotechnology, vol. 37, pp. 1091, http://dx.doi.org/10.1038/s41587-019-0252-6

Bolyen E; Rideout JR; Dillon MR; Bokulich NA; Abnet CC; Al-Ghalith GA; Alexander H; Alm EJ; Arumugam M; Asnicar F; Bai Y; Bisanz JE; Bittinger K; Brejnrod A; Brislawn CJ; Brown CT; Callahan BJ; Caraballo-Rodríguez AM; Chase J; Cope EK; Da Silva R; Diener C; Dorrestein PC; Douglas GM; Durall DM; Duvallet C; Edwardson CF; Ernst M; Estaki M; Fouquier J; Gauglitz JM; Gibbons SM; Gibson DL; Gonzalez A; Gorlick K; Guo J; Hillmann B; Holmes S; Holste H; Huttenhower C; Huttley GA; Janssen S; Jarmusch AK; Jiang L; Kaehler BD; Kang KB; Keefe CR; Keim P; Kelley ST; Knights D; Koester I; Kosciolek T; Kreps J; Langille MGI; Lee J; Ley R; Liu YX; Loftfield E; Lozupone C; Maher M; Marotz C; Martin BD; McDonald D; McIver LJ; Melnik AV; Metcalf JL; Morgan SC; Morton JT; Naimey AT; Navas-Molina JA; Nothias LF; Orchanian SB; Pearson T; Peoples SL; Petras D; Preuss ML; Pruesse E; Rasmussen LB; Rivers A; Robeson MS; Rosenthal P; Segata N; Shaffer M; Shiffer A; Sinha R; Song SJ; Spear JR; Swafford AD; Thompson LR; Torres PJ; Trinh P; Tripathi A; Turnbaugh PJ; Ul-Hasan S; van der Hooft JJJ; Vargas F; Vázquez-Baeza Y; Vogtmann E; von Hippel M; Walters W, 2019, 'Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2', Nature Biotechnology, vol. 37, pp. 852 - 857, http://dx.doi.org/10.1038/s41587-019-0209-9

Bokulich NA; Kaehler BD; Rideout JR; Dillon M; Bolyen E; Knight R; Huttley GA; Gregory Caporaso J, 2018, 'Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin', Microbiome, vol. 6, http://dx.doi.org/10.1186/s40168-018-0470-z

Kaehler BD, 2017, 'Full reconstruction of non-stationary strand-symmetric models on rooted phylogenies', Journal of Theoretical Biology, vol. 420, pp. 144 - 151, http://dx.doi.org/10.1016/j.jtbi.2017.03.007

Buchmann B; Kaehler B; Maller R; Szimayer A, 2017, 'Multivariate subordination using generalised Gamma convolutions with applications to Variance Gamma processes and option pricing', Stochastic Processes and their Applications, vol. 127, pp. 2208 - 2242, http://dx.doi.org/10.1016/j.spa.2016.10.008

Zhang C; Stadler T; Klopfstein S; Heath TA; Ronquist F, 2016, 'Total-Evidence Dating under the Fossilized Birth-Death Process', SYSTEMATIC BIOLOGY, vol. 65, pp. 228 - 249, http://dx.doi.org/10.1093/sysbio/syv080

Maitip J; Trueman HE; Kaehler BD; Huttley GA; Chantawannakul P; Sutherland TD, 2015, 'Folding behavior of four silks of giant honey bee reflects the evolutionary conservation of aculeate silk proteins.', Insect Biochem Mol Biol, vol. 59, pp. 72 - 79, http://dx.doi.org/10.1016/j.ibmb.2015.02.007

Kaehler BD; Maller RA, 2010, 'A Generalized Skewness Statistic for Stationary Ergodic Martingale Differences', MATHEMATICAL METHODS OF STATISTICS, vol. 19, pp. 267 - 282, http://dx.doi.org/10.3103/S106653071003004X

Sutherland TD; Sriskantha A; Rapson TD; Kaehler BD; Huttley GA, 'Did aculeate silk evolve as an antifouling material?', PLOS ONE, vol. 13, pp. e0203948 - e0203948, http://dx.doi.org/10.1371/journal.pone.0203948

Kaehler BD; Bing Yap V; Huttley GA, 'Standard Codon Substitution Models Overestimate Purifying Selection for Non-Stationary Data', Genome Biology and Evolution, pp. evw308 - evw308, http://dx.doi.org/10.1093/gbe/evw308

Theses / Dissertations

Kaehler B, 2009, Option pricing for alternative risky asset price models, and model verification results